Information for 1-MHRGGTCASGSTGMCC (Motif 1)

T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
Reverse Opposite:
C T A G C A T G C A G T A T G C C G T A T A C G T A G C T A C G G A C T A T C G G T C A G T A C G T A C G A C T C A G T A C T G
p-value:1e-75
log p-value:-1.746e+02
Information Content per bp:1.565
Number of Target Sequences with motif113.0
Percentage of Target Sequences with motif14.27%
Number of Background Sequences with motif634.5
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets49.8 +/- 19.2bp
Average Position of motif in Background48.6 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC
-NAGGTCACNNTGACC
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.90
Offset:2
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC-
--AGGTCACCCTGACCT
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC--
-AAGGTCACGGTGACCTG
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C A C G T A C G T
A C G T C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC----
GTAGGTCACGGTGACCTACT
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC
GTAGGTCACTGGGTCA
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC
--AGGTCA--------
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:MHRGGTCASGSTGMCC-
-NAGAACAGNCTGTNCT
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C A C G T
A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:MHRGGTCASGSTGMCC-
---TGGCAGNCTGCCAG
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C A C G T
A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC
-VAGRACAKWCTGTYC
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:MHRGGTCASGSTGMCC
TRAGGTCA--------
 T G A C G T C A C T G A C A T G C A T G C A G T A T G C C T G A A T G C A T C G A T C G G C A T A T C G G T C A G A T C G A T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T