Information for 8-CTCTAAGGACAGT (Motif 3)

A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
Reverse Opposite:
T G C A A T G C G C A T A C T G A C G T A T G C G A T C G A C T A G C T C T G A T A C G C T G A T C A G
p-value:1e-9
log p-value:-2.149e+01
Information Content per bp:1.466
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 30.4bp
Average Position of motif in Background61.9 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTCTAAGGACAGT
--CAAAGGTCAG-
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTCTAAGGACAGT
---TRAGGTCA--
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCTAAGGACAGT
--CCAGGAACAG-
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTCTAAGGACAGT
----AAGGTCAC-
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCTAAGGACAGT
-NTCAAGGTCA--
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCTAAGGACAGT
---CAAGGHCANV
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTCTAAGGACAGT
-BTCAAGGTCA--
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCTAAGGACAGT
GGTCANYTGAGGWCA--
 A C G T A C G T A C G T A C G T A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCTAAGGACAGT
--TCAAGGTCAN-
 A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTAAGGACAGT
AAGTTCAAGGTCAGC
 A C G T A C G T A G T C G A C T A T G C G A C T T C G A C T G A C T A G T A C G T G C A T G A C C G T A T A C G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C