Information for 4-RCATGGWGSMTTG (Motif 9)

C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C G T A C T G G A C T
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.5 +/- 6.2bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RCATGGWGSMTTG
TAATGGCGGNC--
 C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----RCATGGWGSMTTG
AAGCACATGG-------
 A C G T A C G T A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RCATGGWGSMTTG-
--NNTGTGGATTSS
 C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G A C G T
A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RCATGGWGSMTTG
CAAGATGGCGGC---
 A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RCATGGWGSMTTG
CAAGATGGCGGC---
 A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:RCATGGWGSMTTG--
----TGTGGATTNNN
 C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----RCATGGWGSMTTG
TAAATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----RCATGGWGSMTTG
AATATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----RCATGGWGSMTTG
AAAATACATGTAAAAAT-
 A C G T A C G T A C G T A C G T A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RCATGGWGSMTTG-
GTCATGCHTGRCTGS
 A C G T C T G A A G T C G T C A A C G T A C T G A C T G C G A T A C T G A T C G G T A C A C G T A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C