Information for 3-AGACAGGAGAGGG (Motif 5)

C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
Reverse Opposite:
A G T C G T A C G T A C G A C T A G T C A C G T A T G C A G T C A G C T A C T G A G C T A T G C A G C T
p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.780
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.4 +/- 24.3bp
Average Position of motif in Background62.0 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGACAGGAGAGGG--------
-GCCASCAGGGGGCGCYVNNG
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZEB1/MA0103.2/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGACAGGAGAGGG
---CAGGTGAGG-
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGACAGGAGAGGG-----
TGGCCACCAGGGGGCGCTA
 A C G T C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGACAGGAGAGGG------
TGGCCACCAGGTGGCACTNT
 A C G T C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------AGACAGGAGAGGG
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGGAGAGGG
CCAGACAG-------
 A C G T A C G T C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGACAGGAGAGGG
-CACAGCAGGGGG
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGACAGGAGAGGG
-----GGGGGGGG
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGACAGGAGAGGG
--ACAGGAAGTG-
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G
A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGACAGGAGAGGG--
-----GGAGGGGGAA
 C T G A A T C G T C G A G T A C C T G A C T A G T A C G C G T A A C T G C T G A A C T G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A