Information for 5-CTGCTGGCCAMGTGCC (Motif 9)

A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C C G T A A T G C A C T G A C G T C T A G A T C G T G A C A T G C C G T A C T A G A G T C C G T A A T C G
p-value:1e-17
log p-value:-4.074e+01
Information Content per bp:1.759
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.6 +/- 25.2bp
Average Position of motif in Background71.2 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTGCTGGCCAMGTGCC---
---TTGGCANNNTGCCAAG
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTGCTGGCCAMGTGCC-
---TTGGCATGGTGCCA
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC-
---CTGGCAGNCTGCCA
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

HEY1/MA0823.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC
------GACACGTGCC
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

HES5/MA0821.1/Jaspar

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC-
-----CGGCACGTGCCA
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CTGCTGGCCAMGTGCC
------GGCACGTGNC
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C

HES7/MA0822.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC-
-----TGGCACGTGCCA
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC
------KCCACGTGAC
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGCTGGCCAMGTGCC-
CAKCTGKYCYYTTYCCC
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C A C G T
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTGCTGGCCAMGTGCC
-----NNCCACGTGG-
 A T G C G A C T A C T G A G T C A C G T A T C G A C T G A T G C A G T C C G T A G T A C A T C G A C G T A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T A G C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A C G T