Information for 3-TKGCGTGCSA (Motif 4)

A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
Reverse Opposite:
G A C T A T G C C A T G A G T C C G T A G T A C C T A G T G A C T G C A T C G A
p-value:1e-30
log p-value:-6.963e+01
Information Content per bp:1.630
Number of Target Sequences with motif153.0
Percentage of Target Sequences with motif21.70%
Number of Background Sequences with motif3628.9
Percentage of Background Sequences with motif7.78%
Average Position of motif in Targets58.2 +/- 24.4bp
Average Position of motif in Background50.1 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TKGCGTGCSA
TTGCGTGCVA
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TKGCGTGCSA
-TGCGTG---
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TKGCGTGCSA-
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TKGCGTGCSA
RTACGTGC--
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TKGCGTGCSA
-TACGTGCV-
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TKGCGTGCSA
GGACGTGC--
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TKGCGTGCSA
NNCGCGTGNN-
 A C G T A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TKGCGTGCSA-
GTGGCGTGACNG
 A C G T A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TKGCGTGCSA
--NCGTGACN
 A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TKGCGTGCSA
ATGGGGTGAT-
 A C G T A G C T A C G T A C T G A G T C C A T G A C G T A C T G G T A C T A C G C T G A
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T