Information for 14-CGTCTCACTC (Motif 38)

A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A T C G C G T A A T C G C G T A A G T C A C T G
p-value:1e-6
log p-value:-1.599e+01
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.5 +/- 36.6bp
Average Position of motif in Background60.1 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTCTCACTC--
NCTGTCAATCAN
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCACTC-
GSCTGTCACTCA
 A C G T A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGTCTCACTC--
TGTCTGDCACCT
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGTCTCACTC--
SCTGTCAVTCAV
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGTCTCACTC----
NNAGTCCCACTCNNNN
 A C G T A C G T A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCACTC--
CTGTCTGTCACCT
 A C G T A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGTCTCACTC-
----TGACTCA
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGTCTCACTC---
--TGTGACTCATT
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGTCTCACTC---
---ATGACTCATC
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGTCTCACTC---
-NNVTGASTCATN
 A G T C A C T G A C G T A T G C A C G T A T G C C G T A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A T C G C T A G T G C A C G A T A C T G C T G A A T G C G C A T T G A C G C T A A G C T G A T C