Information for 16-GAGGGCATGTCACTGT (Motif 21)

C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
Reverse Opposite:
C G T A T A G C G C T A T A C G A C G T A C T G C G T A A G T C T G C A C G A T A C T G G T A C G A T C G A T C C A G T G T A C
p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.552
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif603.4
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets52.6 +/- 24.0bp
Average Position of motif in Background51.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0141.1_Pknox2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
AAGCACCTGTCAATAT
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

USF2/MA0526.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
---GTCATGTGACC--
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
-------AGTCACGC-
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCATGTCACTGT
TRAGGTCA---------
 A C G T C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GAGGGCATGTCACTGT
-----CCTGTCAA---
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
---RTCATGTGAC---
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
----GSCTGTCACTCA
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
----VGCTGWCAVB--
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GAGGGCATGTCACTGT
-----AAGGTCAC---
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GAGGGCATGTCACTGT
------NTGTCAN---
 C A T G G T C A C T A G C T A G C A T G T G A C G C T A A C G T T C A G C G A T T A G C T G C A A T G C C G A T A C T G G C A T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T