Information for 2-RGCTCCGGGCCTGVCA (Motif 4)

C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
Reverse Opposite:
C G A T A T C G A G C T A G T C C G T A A C T G A C T G A T G C A T G C A G T C A C T G C T A G C T G A C T A G A T G C G A T C
p-value:1e-14
log p-value:-3.227e+01
Information Content per bp:1.707
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif68.1
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets46.4 +/- 21.6bp
Average Position of motif in Background51.9 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGCTCCGGGCCTGVCA
GGGGCCGAGGCCTG---
 A C G T C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RGCTCCGGGCCTGVCA
----CNAGGCCT----
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:forward strand
Alignment:RGCTCCGGGCCTGVCA
------AGGCCTAG--
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------RGCTCCGGGCCTGVCA
GAGCCTGGTACTGWGCCTGR--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGCTCCGGGCCTGVCA
GGCCCCGCCCCC----
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.55
Offset:9
Orientation:forward strand
Alignment:RGCTCCGGGCCTGVCA
---------GCTGTG-
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:RGCTCCGGGCCTGVCA-
---------CTTGGCAA
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.52
Offset:8
Orientation:forward strand
Alignment:RGCTCCGGGCCTGVCA--
--------VGCTGWCAVB
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:RGCTCCGGGCCTGVCA-
---------GCTGTCAA
 C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--RGCTCCGGGCCTGVCA
TTGGCANNNTGCCAAG--
 A C G T A C G T C T A G A T C G A G T C A G C T A G T C G T A C C T A G T A C G A T C G A G T C A G T C A C G T A C T G T C A G T A G C G C T A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T