Information for 12-CCTGRACAATGGGAGT (Motif 17)

A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
Reverse Opposite:
C G T A A G T C A C G T G T A C A G T C A G T C C G T A A C G T G A C T A C T G A G C T A G C T A G T C G C T A A C T G A C T G
p-value:1e-9
log p-value:-2.188e+01
Information Content per bp:1.785
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 17.6bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
---GAACAATGGN---
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT-
NNTNNACAATGGGANNN
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT-
--RGSMTBCTGGGAAAT
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T A C G T
A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
--VRAACAATGG----
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
---GAACAATGG----
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
--AAAACAATGG----
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCTGRACAATGGGAGT
---RAACAATGGN---
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
----AACAAAGG----
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCTGRACAATGGGAGT---
----AACAATGGTAGTGTT
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:CCTGRACAATGGGAGT
----------CGGAGC
 A G T C G T A C C G A T C T A G C T G A C T G A A G T C C G T A T C G A A C G T A C T G A C T G A C T G C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C