Information for 1-RAWAATTWCTWATTCA (Motif 1)

C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
Reverse Opposite:
C G A T A T C G C G T A C T G A C G A T C G T A C G T A C A T G C G A T C T G A G C T A A C G T A C G T G C T A A C G T A G C T
p-value:1e-11
log p-value:-2.699e+01
Information Content per bp:1.770
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.2 +/- 22.1bp
Average Position of motif in Background34.5 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU4F1/MA0790.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:RAWAATTWCTWATTCA-
---CATTAATTATTCAT
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A A C G T
A C G T A C G T A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:RAWAATTWCTWATTCA-
-CTCATTAATTATGCAT
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A A C G T
A C G T A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

Lhx3/MA0135.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:RAWAATTWCTWATTCA
--AAATTAATTAATC-
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RAWAATTWCTWATTCA-
-CTCATTAATTATGCAT
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A A C G T
A C G T A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RAWAATTWCTWATTCA
GANGTAATTAATTANN--
 A C G T A C G T C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:RAWAATTWCTWATTCA
----ATGCATAATTCA
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0038.1_Hlx/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RAWAATTWCTWATTCA
TGTAATTAATTATGG-
 C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G A C G T

PH0070.1_Hoxc5/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RAWAATTWCTWATTCA
CGAATTAATTAATTACT--
 A C G T A C G T A C G T C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
T A G C T A C G G T C A T C G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T G C A T T G C A G A C T G C A T A C G T A C G T

PH0008.1_Barx2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----RAWAATTWCTWATTCA
NANAANTAATTANTTA----
 A C G T A C G T A C G T A C G T C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A A C G T A C G T A C G T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RAWAATTWCTWATTCA
GANTTAATTAATTANNN-
 A C G T A C G T C T G A C G T A C G A T C G T A G T C A C A G T A G C T G C T A G T A C G C A T G C A T C G T A A G C T A C G T T A G C C G T A
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C A C G T