Information for 14-CAGTCAGTAAAAG (Motif 29)

G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G
Reverse Opposite:
G T A C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G C G T A A G T C C G A T A C T G
p-value:1e-6
log p-value:-1.542e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.5 +/- 18.0bp
Average Position of motif in Background89.2 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGTCAGTAAAAG
NCTGTCAATCAN--
 A C G T G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGTCAGTAAAAG
SCTGTCAVTCAV--
 A C G T G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGTCAGTAAAAG
GSCTGTCACTCA---
 A C G T A C G T G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGTCAGTAAAAG-
--GAAAGTGAAAGT
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T
A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGTCAGTAAAAG---
CTACCAATAAAATTCT
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGTCAGTAAAAG----
AATGCAATAAAATTTAT
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGTCAGTAAAAG
--NGCAATTAAA-
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGTCAGTAAAAG---
-AGAAAGTGAAAGTGA
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAGTCAGTAAAAG-
--GNCTATAAAAGG
 G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGTCAGTAAAAG-
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T G T A C C G T A A C T G A C G T A G T C C G T A A C T G A C G T G T C A C G T A C G T A C G T A A C T G A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T