Information for 18-AACAGAAGTTGCCAGA (Motif 19)

C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C T A G A T C G A G T C C G T A C T G A A G T C A C G T C A G T G A T C C A G T T A C G A G C T A C G T
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.718
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 18.9bp
Average Position of motif in Background35.6 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA
-------CTTGGCAA-
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA-
-----CTGTTGCTAGGS
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA--
--------ATGCCAGACN
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA---
------AGGTGNCAGACAG
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AACAGAAGTTGCCAGA--
------AGGTGHCAGACA
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Tcf21/MA0832.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AACAGAAGTTGCCAGA
NCAACAGCTGTTGC----
 A C G T A C G T C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A
T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA-----
-----NNNNTGCCAGTGATTG
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA-
--TAGAANVTTCTAGAA
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A A C G T
A C G T A C G T G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA
------NNTTGGCANN
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

MYF6/MA0667.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AACAGAAGTTGCCAGA
AACAGCTGTT------
 C G T A C T G A A G T C G C T A C A T G G C T A C G T A C T A G A G C T C G A T C T A G A T G C A G T C C G T A A C T G C G T A
T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T