Information for 2-GGTCAARSTT (Motif 7)

A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T
Reverse Opposite:
C G T A C G T A A T G C A G C T A G C T A C G T A T C G C G T A A G T C A G T C
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.803
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif116.3
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets54.7 +/- 24.6bp
Average Position of motif in Background52.8 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGTCAARSTT
AGGTCA-----
 A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT--
GGGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT--
GGGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT--
GGGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT--
GAGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GGTCAARSTT--
AGGGGTCAGAGGTCA
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT--
GAGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGTCAARSTT
AGRGGTCA-----
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGTCAARSTT-
AGGTCAAGGTCA
 A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGTCAARSTT----
GGGGTCAAAGTCCAAT
 A C G T A C G T A C T G A C T G A C G T A T G C G T C A C T G A C T G A A T C G G C A T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T