Information for 10-AGCAGAGAGC (Motif 23)

C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C
Reverse Opposite:
T A C G A T G C C G A T A G T C A C G T A T G C G C A T A T C G A G T C G A C T
p-value:1e-6
log p-value:-1.546e+01
Information Content per bp:1.830
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif361.6
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets51.5 +/- 27.2bp
Average Position of motif in Background49.9 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGAGAGC
CACAGCAGGGGG-
 A C G T A C G T A C G T C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGAGAGC---
NNNACCGAGAGTNNN
 A C G T A C G T C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGAGC-
-CCAGACRSVB
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGAGC--
-CTTGAGTGGCT
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGCAGAGAGC--
--TTGAGTGSTT
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGCAGAGAGC-
------CAGCC
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGAGC
-CCAGACAG-
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGAGC-
-GCAGTGATTT
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCAGAGAGC-
-BTBRAGTGSN
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCAGAGAGC
AACAGATGGC
 C T G A C T A G T A G C C G T A A T C G C G T A C T A G C G T A A T C G A T G C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C