Information for 8-GAGACACTSTGGG (Motif 12)

A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
Reverse Opposite:
T A G C A T G C A G T C C G T A T A C G G T C A A T C G A C G T A C T G A G C T A G T C A G C T A T G C
p-value:1e-9
log p-value:-2.297e+01
Information Content per bp:1.774
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.1 +/- 23.8bp
Average Position of motif in Background55.1 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGACACTSTGGG
CCAGACAG------
 A C G T A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGACACTSTGGG--
CAATGCATTGTGGGTA
 A C G T A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGACACTSTGGG
CCAGACRSVB----
 A C G T A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGACACTSTGGG
-MRSCACTYAA--
 A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGACACTSTGGG
-TGGCAGTTGN--
 A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGACACTSTGGG---
-GGTCANNGTGACCTN
 A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGACACTSTGGG
BCAGACWA------
 A C G T A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGACACTSTGGG--
AGGTCACCCTGACCT
 A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------GAGACACTSTGGG
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GAGACACTSTGGG----
--RGSMTBCTGGGAAAT
 A T C G C T G A A C T G C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C T G A T C G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T