Information for 6-CAGCGCCTCCTGG (Motif 3)

A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G
Reverse Opposite:
T A G C A G T C G T C A C T A G A T C G G C T A A C T G A C T G T G A C A C T G A G T C A C G T A C T G
p-value:1e-11
log p-value:-2.735e+01
Information Content per bp:1.766
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif170.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets52.8 +/- 26.7bp
Average Position of motif in Background53.4 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAGCGCCTCCTGG----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGCGCCTCCTGG------
TAGCGCCCCCTGGTGGCCA
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAGCGCCTCCTGG-
----NNCACCTGNN
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGCCTCCTGG
TGCCTGCGYCMCCTT-
 A C G T A C G T A C G T A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGCGCCTCCTGG------
ANAGTGCCACCTGGTGGCCA
 A C G T A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGCGCCTCCTGG--
---SNGCACCTGCHS
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T A C G T
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

FIGLA/MA0820.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAGCGCCTCCTGG-
----ACCACCTGTT
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAGCGCCTCCTGG-
----ACATCCTGNT
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

TCF3/MA0522.2/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGCGCCTCCTGG-
----AACACCTGCT
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGCGCCTCCTGG-
--CCCCCTGCTGTG
 A G T C C G T A T A C G T G A C A C T G G T A C A G T C C A G T A T G C A G T C C A G T A C T G A T C G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G