Information for 8-KKGCCCTGAACCA (Motif 10)

A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C G T C A
p-value:1e-9
log p-value:-2.196e+01
Information Content per bp:1.910
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 20.4bp
Average Position of motif in Background61.7 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:KKGCCCTGAACCA
TGACCTTGACCT-
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KKGCCCTGAACCA
TGACCTTGACCT-
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KKGCCCTGAACCA
CTGCCCGCA----
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--KKGCCCTGAACCA
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KKGCCCTGAACCA
-GGCCATAAATCA
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--KKGCCCTGAACCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:KKGCCCTGAACCA
TGACCTTGAN---
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KKGCCCTGAACCA---
GAGCCCTTGTCCCTAA
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:KKGCCCTGAACCA
-GGCCATAAATCA
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KKGCCCTGAACCA
--GCCATAAATCA
 A C G T A C T G A C T G A G T C A G T C A G T C A C G T C T A G G T C A G T C A A G T C A G T C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A