Information for 3-GCAACAGCGTCTC (Motif 3)

A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G G T C A C T A G G T C A A G T C A C T G A G T C A C G T A C T G A C G T A C G T A T C G A G T C
p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets71.0 +/- 15.8bp
Average Position of motif in Background47.8 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAACAGCGTCTC-
AGCAACAGCCGCACC
 A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAACAGCGTCTC--
GHTACAWTGTADCHR
 A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C A C G T A C G T
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCAACAGCGTCTC
ADGGYAGYAGCATCT-
 A C G T A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAACAGCGTCTC
TWGHWACAWTGTWDC
 A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAACAGCGTCTC
TGGAACAGMA----
 A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCAACAGCGTCTC-
GCAACAGCTGTTGT
 A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C A C G T
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGTCTC
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGTCTC
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCAACAGCGTCTC
SCCTAGCAACAG------
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGTCTC
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C G T A A G T C C G T A A C T G G T A C A C T G A C G T A G T C A C G T A G T C
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T