Information for 3-TGTCGGGCAC (Motif 16)

A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
Reverse Opposite:
T A C G C G A T A T C G T A G C A G T C T A G C C A T G G T C A A T G C T C G A
p-value:1e-6
log p-value:-1.476e+01
Information Content per bp:1.672
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif7.19%
Number of Background Sequences with motif1639.0
Percentage of Background Sequences with motif3.36%
Average Position of motif in Targets56.4 +/- 23.7bp
Average Position of motif in Background50.1 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGGGCAC----
NNNNTTGGGCACNNCN
 A C G T A C G T A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGTCGGGCAC--
TGTCTGDCACCT
 A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TGTCGGGCAC
-NGTGGGCAT
 A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGGCAC--
CTGTCTGTCACCT
 A C G T A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGTCGGGCAC
-TNNGGGCAG
 A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGTCGGGCAC
GCTCGGSCTC
 A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGGCAC
CTGTCTGG---
 A C G T A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGTCGGGCAC
GGTCTGGCAT
 A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCGGGCAC--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGGCAC
CWGGCGGGAA-
 A C G T A G C T T A C G C A G T G T A C A T C G T C A G A T C G T A G C G C T A A T G C
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T