Information for 2-CATAAAHATTTAT (Motif 4)

A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
Reverse Opposite:
C G T A A C G T C G T A C T G A C G T A G C A T C A G T A C G T A G C T A C G T C G T A A C G T C T A G
p-value:1e-5
log p-value:-1.235e+01
Information Content per bp:1.776
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.30%
Number of Background Sequences with motif118.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets75.2 +/- 12.9bp
Average Position of motif in Background47.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CATAAAHATTTAT--
YATGCATATRCATRT
 A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CATAAAHATTTAT
CTCATGAATATTCAT
 A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CATAAAHATTTAT
ACGGCCATAAAATTAAT-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATAAAHATTTAT
AATAAACAATN--
 A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATAAAHATTTAT
AAAGGTAATAAAATTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATAAAHATTTAT
GCAATAAAA------
 A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CATAAAHATTTAT
AGAGCCATAAAATTCG--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATAAAHATTTAT
GTCATAAAAN-----
 A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATAAAHATTTAT
NGYCATAAAWCH----
 A C G T A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CATAAAHATTTAT
AAGCCATAAAA------
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T G T C A C T G A C G T A G C T A C G T A A C G T A G C T C G A T G T C A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T