Information for 1-AAACTTCYAACACAGA (Motif 2)

G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
Reverse Opposite:
C G A T T G A C A C G T A C T G C G A T T A C G A C G T A C G T C T G A C A T G G C T A C G T A A C T G C G A T C G A T A C G T
p-value:1e-7
log p-value:-1.651e+01
Information Content per bp:1.629
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif11.63%
Number of Background Sequences with motif113.0
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets47.6 +/- 22.8bp
Average Position of motif in Background48.3 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAACTTCYAACACAGA-
-----NWAACCACADNN
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AAACTTCYAACACAGA
------AAACCACAGC
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAACTTCYAACACAGA-
--AAAAATAACAAACGG
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A A C G T
A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AAACTTCYAACACAGA-
------AAACCACAGAN
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAACTTCYAACACAGA---
--NNNTCCATCCCATAANN
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AAACTTCYAACACAGA
-----NAAACCACAG-
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AAACTTCYAACACAGA
------AAACCACANN
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX3/MA0684.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AAACTTCYAACACAGA
------AAACCGCAAA
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AAACTTCYAACACAGA
CAAACAACAACACCT-
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:AAACTTCYAACACAGA-----
-----CGAAGCACACAAAATA
 G T C A G C T A G C T A A G T C C G A T C G A T G T A C A G C T C G T A T G C A A T G C G C T A G T A C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A