Information for 4-ATTGATGGCT (Motif 10)

C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T
p-value:1e-2
log p-value:-6.317e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.0 +/- 0.0bp
Average Position of motif in Background52.0 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGATGGCT--
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ATTGATGGCT
TGATTRATGGCY
 A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--ATTGATGGCT
TGATTTATGGC-
 A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ATTGATGGCT
TGATTTATGGCC
 A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:ATTGATGGCT
GTTAATGGCC
 C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATTGATGGCT
TGATTTATGGCC
 A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATTGATGGCT
ATTGATTYND
 C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ATTGATGGCT
NTGATTTATGGCC
 A C G T A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATTGATGGCT
ATGATKGATGRC-
 A C G T A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATTGATGGCT
TGATTGATGA--
 A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T