Information for 5-AAAGACAAGC (Motif 15)

C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
Reverse Opposite:
A C T G G T A C C G A T A C G T A C T G A C G T A T G C C G A T G A C T G A C T
p-value:1e-7
log p-value:-1.662e+01
Information Content per bp:1.727
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif6.27%
Number of Background Sequences with motif712.4
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets36.6 +/- 30.6bp
Average Position of motif in Background50.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAAGACAAGC
AAAAGTCAA--
 A C G T C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAAGACAAGC
-TTGACAG--
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAAGACAAGC
GTAAACAAT-
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAGACAAGC--
-AAGGCAAGTGT
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAAGACAAGC-
ANAGATAAGAA
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C A C G T
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAAGACAAGC--
---GACAATGNN
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAGACAAGC
-TTGACAGG-
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAAGACAAGC
RHTGWCAR--
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAAGACAAGC
BCAGACWA--
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAGACAAGC
--AGATAAGA
 C T G A C T G A C G T A A T C G T G C A A G T C G T C A C G T A C A T G G T A C
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A