Information for 4-CAVTVATCCHCCCAAA (Motif 9)

A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T A C G T C T A G C T A G A T C G C A G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T C T A G
p-value:1e-7
log p-value:-1.671e+01
Information Content per bp:1.780
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.7 +/- 13.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAVTVATCCHCCCAAA
--ATAATCCC------
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAVTVATCCHCCCAAA-
---TTTTCCCGCCAAAA
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

E2F8/MA0865.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAVTVATCCHCCCAAA
----TTTCCCGCCAAA
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
A C G T A C G T A C G T A C G T G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CAVTVATCCHCCCAAA---
----AAGCCCCCCAAAAAT
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAVTVATCCHCCCAAA
NNNAATTAATCCCCNCN--
 A C G T A C G T A C G T A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAVTVATCCHCCCAAA
GNNNATTAATCCCTNCN--
 A C G T A C G T A C G T A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAVTVATCCHCCCAAA
-NNTAATCCNGNCNN-
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAVTVATCCHCCCAAA
NNNATTAATCCGNTTNA-
 A C G T A C G T A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAVTVATCCHCCCAAA
NNNATTAATCCGNTTNA-
 A C G T A C G T A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAVTVATCCHCCCAAA
--TTAATCCC------
 A G T C C G T A T C G A C G A T T A C G C G T A A C G T G T A C A G T C G C T A A T G C G A T C A G T C C G T A G T C A C G T A
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T