Information for 2-RCTCCAACCCCCA (Motif 3)

C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A
Reverse Opposite:
A G C T C T A G A C T G A C T G C T A G A C T G A G C T C G A T A C T G A T C G C T G A A C T G G A C T
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.777
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif38.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets51.4 +/- 24.0bp
Average Position of motif in Background49.3 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RCTCCAACCCCCA
ACTACAATTCCC-
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

PB0097.1_Zfp281_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RCTCCAACCCCCA--
TCCCCCCCCCCCCCC
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T A C G T
C A G T A G T C G T A C G T A C T A G C G T A C G A T C G A T C G T A C G A T C G T A C G T A C G T A C G A T C T G A C

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RCTCCAACCCCCA------
RACTACAACTCCCAGVAKGC
 A C G T C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RCTCCAACCCCCA-
--CCCCTCCCCCAC
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T
A C G T A C G T T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RCTCCAACCCCCA
GCTCCGCCCMCY-
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T

PB0100.1_Zfp740_1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RCTCCAACCCCCA----
-CCCCCCCCCCCACTTG
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T A C G T A C G T A C G T
A C G T A G T C T A G C A G T C T A G C T G A C G T A C G T A C G A T C G A T C G T A C G T A C G T C A G T A C G C A T G A C T A T C G

SP1/MA0079.3/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RCTCCAACCCCCA
GCCCCGCCCCC--
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A
A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RCTCCAACCCCCA------
AACTACAATTCCCAGAATGC
 A C G T C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RCTCCAACCCCCA
GGCTCYAKCAYC--
 A C G T C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RCTCCAACCCCCA--
-CCCCCGCCCCCGCC
 C T A G A G T C A G C T A T G C A G T C C G T A C T G A T G A C A G T C A G T C A G T C G A T C C T G A A C G T A C G T
A C G T A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C