Information for 5-ATGTCTGTGC (Motif 13)

C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T
p-value:1e-5
log p-value:-1.206e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.8 +/- 21.8bp
Average Position of motif in Background47.5 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGTCTGTGC
VBSYGTCTGG--
 A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATGTCTGTGC---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATGTCTGTGC----
NNGCGTGTGTGCNGCN
 A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATGTCTGTGC----
NNNNTTGTGTGCTTNN
 A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGTCTGTGC
CTGTCTGG--
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGTCTGTGC
TWGTCTGV--
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ATGTCTGTGC----
----CTGTTCCTGG
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATGTCTGTGC
---GCTGTG-
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATGTCTGTGC-
-WDNCTGGGCA
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATGTCTGTGC-------
NNGTATGTGCACATNNN
 C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G