Information for 4-AAAGMATTCTCTA (Motif 11)

C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A
Reverse Opposite:
C G A T T G C A C A T G G C T A T A C G G C T A C G T A C G A T A C G T A G T C G C A T C G A T A C G T
p-value:1e-6
log p-value:-1.585e+01
Information Content per bp:1.687
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.51%
Number of Background Sequences with motif624.7
Percentage of Background Sequences with motif1.26%
Average Position of motif in Targets42.5 +/- 27.2bp
Average Position of motif in Background51.0 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAAGMATTCTCTA---
GGAAAAATTGTTAGGAA
 A C G T C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAGMATTCTCTA---
AATCAATTCAATAATT
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AAAGMATTCTCTA-
-----ATTGTTTAN
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAGMATTCTCTA---
--AAAATTGTTATGAA
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAAGMATTCTCTA
ATAAACAATTAAACA
 A C G T A C G T C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AAAGMATTCTCTA--
----TATTGTTTATT
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AAAGMATTCTCTA---
-TAGAANVTTCTAGAA
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T A C G T
A C G T G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.53
Offset:-8
Orientation:forward strand
Alignment:--------AAAGMATTCTCTA
AAACAGACAAAGGAAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AAAGMATTCTCTA--
NANAGGGATTAATTATN
 A C G T A C G T C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

Foxj3/MA0851.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AAAGMATTCTCTA------
--NNNTTTGTTTACNTTNN
 C G T A G C T A C G T A T A C G T G C A C G T A C G A T C A G T A T G C C A G T G T A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T