Information for 4-CGGCGGCCACTCA (Motif 6)

A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G G T C A A T C G A C G T A C T G A C T G A G T C A G T C A C T G A G T C A G T C A C T G
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.0 +/- 23.0bp
Average Position of motif in Background35.6 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGGCGGCCACTCA
-GSCTGTCACTCA
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGGCGGCCACTCA-
--SCTGTCAVTCAV
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CGGCGGCCACTCA--
----AGCCACTCAAG
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGGCGGCCACTCA-
--NCTGTCAATCAN
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGGCGGCCACTCA-
----AASCACTCAA
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

GLI2/MA0734.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGGCGGCCACTCA-
--GCGACCACACTG
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T
A C G T A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGGCGGCCACTCA
---CRCCCACGCA
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A
A C G T A C G T A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGGCGGCCACTCA--
---RGGGCACTAACY
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

ZBTB7A/MA0750.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGGCGGCCACTCA
-GGCGACCACCGA
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A
A C G T A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGGCGGCCACTCA-
----MRSCACTYAA
 A G T C A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T G C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A