Information for 2-CGCCCCGGGTGCG (Motif 6)

A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A T G C A G T C A G T C A C T G A C T G A C T G C T A G A G T C A T C G
p-value:1e-8
log p-value:-1.868e+01
Information Content per bp:1.907
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 20.5bp
Average Position of motif in Background47.4 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCCCGGGTGCG----
ATCCACAGGTGCGAAAA
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGCCCCGGGTGCG-
CCCCCCCGGGGGGGT
 A C G T A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCCCCGGGTGCG-
CCCCCCCGGGGGGGT
 A C G T A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

TCF4/MA0830.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CGCCCCGGGTGCG
---NNCAGGTGCG
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G
A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGCCCCGGGTGCG-
GGCCYCCTGCTGDGH
 A C G T A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGCCCCGGGTGCG
CCCCCCCGGGGGNN
 A C G T A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGCCCCGGGTGCG--
-GTGCCGTGTGCAAA
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T A C G T
A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CGCCCCGGGTGCG-
-----CAGGTGAGG
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

SPDEF/MA0686.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCCCCGGGTGCG
--ACCCGGATGTA
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G
A C G T A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGCCCCGGGTGCG
-CCCCCTGCTGTG
 A T G C A C T G A G T C G T A C A G T C A G T C A C T G A C T G A T C G A C G T A C T G A G T C A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G