Information for 5-CCGCAGCCGGCTC (Motif 7)

A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
Reverse Opposite:
A T C G G T C A A T C G A T G C T A G C A C T G A T C G T A G C A G C T A T C G T A G C C T A G A T C G
p-value:1e-8
log p-value:-1.910e+01
Information Content per bp:1.742
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.04%
Number of Background Sequences with motif371.0
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets61.2 +/- 26.6bp
Average Position of motif in Background50.1 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCCGGCTC
-TACATCCGGGT-
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CCGCAGCCGGCTC
--------NGCTN
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

EGR1/MA0162.2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCGCAGCCGGCTC-
CCCCCGCCCCCGCC
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C A C G T
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C

PB0077.1_Spdef_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCGCAGCCGGCTC---
GTACATCCGGATTTTT
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C A C G T A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCGCAGCCGGCTC---
-GGCCYCCTGCTGDGH
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCGCAGCCGGCTC
--CCAGACAG---
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CCGCAGCCGGCTC---
------CCTGCTGAGH
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCGCAGCCGGCTC
--CCAGACRSVB-
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCGCAGCCGGCTC--
---CCCCCTGCTGTG
 A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

NRF1/MA0506.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCGCAGCCGGCTC
TGCGCAGGCGC---
 A C G T A T G C A G T C A T C G A T G C T C G A A T C G A T G C A G T C A T C G A T C G A T G C A C G T A T G C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T