Information for 1-CTGCDHCTTVGCAAAB (Motif 1)

A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
Reverse Opposite:
T A C G A C G T A C G T A C G T A C T G A G T C A G C T C T G A C G T A A C T G C T A G G C T A A C T G G T A C C G T A A C T G
p-value:1e-11
log p-value:-2.617e+01
Information Content per bp:1.773
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.2 +/- 24.9bp
Average Position of motif in Background34.5 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB--
---TACCATAGCAACGGT
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGCDHCTTVGCAAAB------
TGTGACCCTTAGCAACCGATTAA
 A C G T A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTGCDHCTTVGCAAAB
-----NNTTGGCANN-
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CTGCDHCTTVGCAAAB
------CTTGGCAA--
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB--
---CCGCATAGCAACGGA
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB
-TGTTKCCTAGCAACM
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB---
----ACCGTGACTAATTNN
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CTGCDHCTTVGCAAAB
------NTTGGCANN-
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB
-GTTGCCATGGCAAC-
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:forward strand
Alignment:CTGCDHCTTVGCAAAB
-------TTGGCA---
 A G T C C G A T A C T G A G T C C G A T G A T C A G T C A C G T A G C T T C G A C T A G A G T C G T C A C G T A C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T