Information for 4-TRGAGTWGTWWAT (Motif 9)

A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T
Reverse Opposite:
C G T A A C G T C G A T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A G T C A G T C C G T A
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.2 +/- 17.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT----
TTAGGTCGTAAAATTTC
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TRGAGTWGTWWAT-
---TATTGTTTATT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Foxj2/MA0614.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TRGAGTWGTWWAT
-----TTGTTTAC
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT---
TAAAGTCGTAAAACAT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT---
TAAAGTCGTAAAATAG
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT---
TAAAGTCGTAAAACGT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT----
TAAGGTCGTAAAATCCT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TRGAGTWGTWWAT
---AGGTGTTAAT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TRGAGTWGTWWAT----
CAAGGTCGTAAAATCTT
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

FOXG1/MA0613.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TRGAGTWGTWWAT
-----TTGTTTAC
 A C G T C T A G A C T G C G T A C T A G A C G T C G A T A C T G A C G T C G A T G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C