Information for 2-CBAGAAAGGABCA (Motif 6)

A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G T G C A A G C T A G T C A G T C C G A T A C G T A C G T A G T C A C G T T A C G A C T G
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.855
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.2 +/- 27.9bp
Average Position of motif in Background63.2 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CBAGAAAGGABCA-
GGAGAAAGGTGCGA
 A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CBAGAAAGGABCA
-AACAAAGG----
 A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CBAGAAAGGABCA
-RACAAWGG----
 A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CBAGAAAGGABCA-
--ACAAAGGNBCCT
 A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CBAGAAAGGABCA
--ACAAAG-----
 A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CBAGAAAGGABCA
GNNACCGAGAATNNN---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CBAGAAAGGABCA
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

BCL6B/MA0731.1/Jaspar

Match Rank:8
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------CBAGAAAGGABCA
TGAATTCCTAGAAAGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CBAGAAAGGABCA
VRRACAAWGG----
 A C G T A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CBAGAAAGGABCA
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A C G T A C G T A A C T G A C T G C T G A A C G T A G T C C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T