Information for 4-CYTTGGCAGCAAGTCA (Motif 5)

A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
Reverse Opposite:
C G A T A C T G T C G A A G T C A C G T A G C T A T C G T A G C A C G T A C T G A G T C A T G C G C T A G T C A C T A G C T A G
p-value:1e-12
log p-value:-2.892e+01
Information Content per bp:1.681
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif25.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.7 +/- 25.3bp
Average Position of motif in Background47.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CYTTGGCAGCAAGTCA-
---TGGCACCATGCCAA
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CYTTGGCAGCAAGTCA-
---TGGCAGNCTGCCAG
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CYTTGGCAGCAAGTCA-
-CTTGGCANNNTGCCAA
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CYTTGGCAGCAAGTCA
NNTTGGCANN------
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CYTTGGCAGCAAGTCA
-----ACAGGAAGTG-
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CYTTGGCAGCAAGTCA
-----ACAGGAAGTG-
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CYTTGGCAGCAAGTCA
-CTTGGCAA-------
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CYTTGGCAGCAAGTCA
-NTTGGCANN------
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CYTTGGCAGCAAGTCA
NCTANGTCAGCAAATTT
 A C G T A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CYTTGGCAGCAAGTCA
----AACAGGAAGT--
 A G T C G A T C A C G T C G A T A T C G T C A G G T A C G T C A A T C G A T G C C T G A T C G A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T