Information for 20-CCTTTATCCCTCTGAA (Motif 42)

A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.022e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 11.7bp
Average Position of motif in Background33.2 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0124.1_Gabpa_2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTTTATCCCTCTGAA
CCGTCTTCCCCCTCAC
 A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTATCCCTCTGAA
NTTGTTAATCCCTCTNN-
 A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A A C G T

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTATCCCTCTGAA
ATAGTTAATCCCCCNNA-
 A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A A C G T

PH0122.1_Obox2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTATCCCTCTGAA
ATAGTTAATCCCCCTCA-
 A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A A C G T

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTATCCCTCTGAA
NTAGTTAATCCCCTTAN-
 A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTTTATCCCTCTGAA
YCTTTGTTCC------
 A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCTTTATCCCTCTGAA
GATAATTAATCCCTCTT--
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCTTTATCCCTCTGAA
AATCGTTAATCCCTTTA--
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTTATCCCTCTGAA
NNGCACCTTTCTCC-------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTTTATCCCTCTGAA
CCTTTGTTTT------
 A G T C A G T C A C G T A C G T A C G T C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G C G T A C G T A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T