Information for 6-AGAGGACAAT (Motif 8)

C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T
Reverse Opposite:
C G T A A G C T A C G T C T A G A G C T A G T C A G T C A C G T A G T C C G A T
p-value:1e-8
log p-value:-1.957e+01
Information Content per bp:1.871
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif64.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets41.1 +/- 22.8bp
Average Position of motif in Background53.2 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGAGGACAAT
TRAGGTCA--
 C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGGACAAT
AGRGGTCA--
 C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGAGGACAAT---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGAGGACAAT---
----GACAATGNN
 C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAT
CAAAGGTCAG-
 A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGAGGACAAT--
--AAAACAATGG
 C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAT-----
TTTAGAACAATAAAAT
 A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAT--
CAAAGGTCAAGGG
 A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAT----
ARGAGGMCAAAATGW
 A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGAGGACAAT---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G C T G A A G T C C G T A C T G A C G A T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A