Information for 3-CCAGCCAGCC (Motif 23)

T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
Reverse Opposite:
C A T G C T A G A T G C G C A T T A C G A C T G T A G C A G C T A C T G A T C G
p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.651
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif17.48%
Number of Background Sequences with motif5304.4
Percentage of Background Sequences with motif10.80%
Average Position of motif in Targets52.2 +/- 26.5bp
Average Position of motif in Background49.9 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGCC
CCAGACAG--
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGCC-----
SCAGYCADGCATGAC
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCAGCC--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGCC
BCAGACWA--
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGCC
CCAGACRSVB
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCAGCC--
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGCCAGCC
--AGCGCGCC
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCAGCCAGCC
-----CAGCC
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCAGCCAGCC-
-ATGCCAGACN
 T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCAGCC
GGACCACCCACG-
 A C G T A C G T A C G T T A G C T G A C T C G A A T C G T G A C A T G C C G T A T A C G G A T C G T A C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T