Information for 3-CTTGTTCATCCCT (Motif 19)

A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A T C G C G T A A C G T C T A G C G T A C T G A G T A C C G T A C G T A A C T G
p-value:1e-7
log p-value:-1.837e+01
Information Content per bp:1.936
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.8 +/- 10.8bp
Average Position of motif in Background59.1 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTGTTCATCCCT----
NTTGTTAATCCCTCTNN
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0121.1_Obox1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGTTCATCCCT----
NTAGTTAATCCCCTTAN
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGTTCATCCCT----
ATAGTTAATCCCCCNNA
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGTTCATCCCT---
AATCGTTAATCCCTTTA
 A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Foxj2/MA0614.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTGTTCATCCCT
-TTGTTTAC----
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T
A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTGTTCATCCCT----
ATAGTTAATCCCCCTCA
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTTCATCCCT---
GNNNATTAATCCCTNCN
 A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTTCATCCCT---
GANNATTAATCCCTNNN
 A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTGTTCATCCCT
---NYTAATCCYB
 A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTTCATCCCT--
GNNAGCTAATCCCCCN
 A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G T C C G T A A C G T A T G C A G T C A G T C A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T