Information for 3-CAGGMAKATTTTGCAG (Motif 5)

A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
Reverse Opposite:
G T A C A C G T A C T G A T G C G T C A T C G A C G T A C T G A A C G T T G A C A G C T A C T G A G T C G T A C A C G T A C T G
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.713
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 28.9bp
Average Position of motif in Background43.1 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAGGMAKATTTTGCAG
-ATGMATATDC-----
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGGMAKATTTTGCAG
-ATGAATATTC-----
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CAGGMAKATTTTGCAG-
------NATTGTGCAAT
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CAGGMAKATTTTGCAG---
----ANATTTTTGCAANTN
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CAGGMAKATTTTGCAG
CCAGGAACAG-------
 A C G T A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CAGGMAKATTTTGCAG
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

NEUROG2/MA0669.1/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CAGGMAKATTTTGCAG
--GACATATGTT----
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:CAGGMAKATTTTGCAG-
-------NNTTGGCANN
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

ZBTB18/MA0698.1/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:CAGGMAKATTTTGCAG
---NAACATCTGGATN
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A C G T A C G T A C G T T C A G G T C A C T G A A G T C T G C A C A G T T A G C G C A T C A T G A C T G T G C A G C A T C A T G

PB0078.1_Srf_1/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CAGGMAKATTTTGCAG
-TTCCATATATGGAA-
 A G T C G T C A C A T G C T A G G T A C C T G A A C T G G T C A A G C T C G A T A G C T A C G T A T C G T G A C C G T A C A T G
A C G T G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T