Information for 21-RGGYYTMCRCTGCCAW (Motif 39)

C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C G T C A A C T G A G T C A C T G A C T G C G T A C T A G T C A G A G T C A G T C A G C T
p-value:1e-7
log p-value:-1.698e+01
Information Content per bp:1.834
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.7 +/- 22.5bp
Average Position of motif in Background33.7 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.60
Offset:10
Orientation:reverse strand
Alignment:RGGYYTMCRCTGCCAW
----------TGCCAA
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.60
Offset:8
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW--
--------GGTGCCAAGT
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.60
Offset:8
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW-
--------CGTGCCAAG
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:9
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW-
---------TTGCCAAG
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW
-----CCAACTGCCA-
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:RGGYYTMCRCTGCCAW
--------GCTGTCAA
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.55
Offset:9
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW--
---------ATGCCAACC
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.54
Offset:9
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW--
---------CTGCCCGCA
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.53
Offset:7
Orientation:forward strand
Alignment:RGGYYTMCRCTGCCAW-
-------VGCTGWCAVB
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:RGGYYTMCRCTGCCAW
--------CCTGTCAA
 C T G A C T A G A C T G A G T C A G T C A C G T G T A C A G T C C T A G A G T C A C G T A C T G A G T C A G T C C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A