Information for 7-CCGTCTCACA (Motif 32)

A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A C T G C G T A A C T G C G T A A G T C A C T G A T C G
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 20.2bp
Average Position of motif in Background53.9 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCGTCTCACA---
CTGTCTGTCACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCGTCTCACA---
-TGTCTGDCACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGTCTCACA
CTGTCTGG--
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCGTCTCACA---
-----TCACACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

TBX1/MA0805.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCGTCTCACA---
-----TCACACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCGTCTCACA-
-KTTCACACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T
A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCGTCTCACA
VBSYGTCTGG--
 A C G T A C G T A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCTCACA----
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

TBX15/MA0803.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CCGTCTCACA---
-----TCACACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCGTCTCACA---
---TTTCACACCT
 A T G C A G T C A C T G A C G T A G T C A C G T A G T C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T