Information for 17-ATGCCAATACACT (Motif 28)

G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
Reverse Opposite:
C G T A C A T G C A G T C T A G C G A T T G C A C G A T A C G T C T A G C T A G T A G C G C T A C G A T
p-value:1e-8
log p-value:-1.936e+01
Information Content per bp:1.659
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif89.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets45.0 +/- 28.0bp
Average Position of motif in Background49.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAATACACT
GGTGCCAAGT----
 A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:ATGCCAATACACT--
---SSAATCCACANN
 G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ATGCCAATACACT
--TCCAATCCACA
 G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATGCCAATACACT
-TGCCAA------
 G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAATACACT
CGTGCCAAG-----
 A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATGCCAATACACT
TTATGCAAAT-----
 A C G T A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAATACACT
TATGCAAAT-----
 A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAATACACT
TATGCWAATBAV--
 A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGCCAATACACT
TATGCAAAT-----
 A C G T G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGCCAATACACT
ATGCCAACC----
 G C T A C G A T A T C G A G T C G A T C G T C A C G T A A C G T G C T A A G T C G C T A G T A C G C A T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T