Information for 11-YWCCCACTTGACAGAT (Motif 19)

A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
Reverse Opposite:
G T C A C G A T A G T C C G A T A C T G C A G T A G T C G T C A C T G A C T A G A C G T A C T G A C T G A C T G C G A T T C A G
p-value:1e-9
log p-value:-2.086e+01
Information Content per bp:1.729
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.9 +/- 21.2bp
Average Position of motif in Background50.9 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:YWCCCACTTGACAGAT
--ACCACTTGAA----
 A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-YWCCCACTTGACAGAT
TAAGCCACTTGAAATT-
 A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-YWCCCACTTGACAGAT
ATAACCACTTGAAAATT
 A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:YWCCCACTTGACAGAT
---CCACTTGAA----
 A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YWCCCACTTGACAGAT
TAAGCCACTTGAAATT-
 A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YWCCCACTTGACAGAT
TAAGCCACTTAACATT-
 A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--YWCCCACTTGACAGAT
CTTAACCACTTAAGGAT-
 A C G T A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---YWCCCACTTGACAGAT
NNAGTCCCACTCNNNN---
 A C G T A C G T A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YWCCCACTTGACAGAT
--ACCACTTAA-----
 A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--YWCCCACTTGACAGAT
CATAACCACTTAACAAC-
 A C G T A C G T A G T C C G T A A G T C G T A C A G T C G T C A A G T C G A C T A C G T A C T G G C T A A G T C C G T A T C A G C G T A C A G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T