Information for 4-GGSTGMCTGWCWC (Motif 10)

A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C
Reverse Opposite:
C T A G C G T A A C T G C G A T A G T C C G T A A C T G C A G T A G T C C G T A A T C G A G T C A G T C
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 26.3bp
Average Position of motif in Background49.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGSTGMCTGWCWC--
--CTGTCTGTCACCT
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GGSTGMCTGWCWC--
---TGTCTGDCACCT
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGSTGMCTGWCWC-
--BTGABTGACAGS
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGSTGMCTGWCWC
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGSTGMCTGWCWC-
----VGCTGWCAVB
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGSTGMCTGWCWC-
--NTGATTGACAGN
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGSTGMCTGWCWC
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGSTGMCTGWCWC
TGCTGACTCA---
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C
G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGSTGMCTGWCWC--
---TGAGTGACAGSC
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

FOS::JUN/MA0099.2/Jaspar

Match Rank:10
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GGSTGMCTGWCWC-
-------TGACTCA
 A C T G A C T G A T G C A C G T A C T G G T C A A G T C A C G T A C T G C G T A G T A C C G A T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A