Information for 1-TGCCCASAATGGKGAT (Motif 2)

A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
Reverse Opposite:
G T C A G A C T A T G C G T C A T A G C G T A C C T G A A G C T A C G T A T G C A C G T C T A G C T A G A C T G A G T C C G T A
p-value:1e-13
log p-value:-3.184e+01
Information Content per bp:1.667
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif6.13%
Number of Background Sequences with motif123.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets51.1 +/- 26.4bp
Average Position of motif in Background51.4 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGCCCASAATGGKGAT
ATTTGCATACAATGG----
 A C G T A C G T A C G T A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT-
NNTNNACAATGGGANNN
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCCCASAATGGKGAT
CTCACACAATGGCGC-
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
--VRAACAATGG----
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
----GACAATGNN---
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
TGCCCAGNHW------
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCCCASAATGGKGAT
ATTTCCAAGAA-------
 A C G T A C G T A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
-----ACAAAG-----
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
----RACAAWGG----
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGCCCASAATGGKGAT
--RNAACAATGG----
 A C G T C T A G T G A C A G T C G A T C C G T A T A C G C G T A C T G A A G C T C A T G A T C G C A G T A T C G C T G A A C G T
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T