Information for 5-CATATAATTADTTTTV (Motif 13)

A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
Reverse Opposite:
A G T C C G T A C G T A C G T A C G T A G A T C A C G T C G T A C T G A C G A T A C G T G T C A C G A T C T G A A C G T C T A G
p-value:1e-7
log p-value:-1.730e+01
Information Content per bp:1.796
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 19.6bp
Average Position of motif in Background34.3 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0108.1_Msx3/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV
NNNTTAATTGGTTTTN
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

Lhx3/MA0135.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CATATAATTADTTTTV
-GATTAATTAATTT--
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
A C G T T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CATATAATTADTTTTV
CNNAGTAATTAATTNNC
 A C G T A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C

PH0142.1_Pou1f1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV-
GANTTAATTAATTANNN
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

PH0149.1_Pou3f4/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV-
GANTTAATTAATTAANN
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PH0001.1_Alx3/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CATATAATTADTTTTV
NTNAGCTAATTAGTTNA-
 A C G T A C G T A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A A C G T

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV
NAATTAATTAATTNNN
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
C A T G C G T A T G C A G C A T G A C T G T C A G C T A G A C T G C A T C T G A C G T A G C A T C A G T C T G A G T C A T C G A

PH0146.1_Pou3f1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV-
NANTTAATTAATTANNN
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G A C G T
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATATAATTADTTTTV
NNNAGCTAATTAGCTTA-
 A C G T A C G T A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A A C G T

PH0028.1_En1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATATAATTADTTTTV
GNATTAATTAGTTNNC
 A G T C C G T A G A C T C G T A A C G T G T C A C G T A A G C T A C G T C G T A C A T G A C G T A C G T A C G T A C G T T A C G
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C