Information for 4-GAWTTATCAA (Motif 10)

A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G C G T A C G A T C G T A C G T A C G T A G C A T A G T C
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.823
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif246.6
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets45.9 +/- 27.6bp
Average Position of motif in Background50.6 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAWTTATCAA----
TATAATTATAATATTC
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAWTTATCAA----
NCGTATTATAATCNTA
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAWTTATCAA----
GCTAATTATAATTATC
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAWTTATCAA----
TTTAATTATAATTAAG
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAWTTATCAA---
CCGTATTATAAACAA
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAWTTATCAA-
TGATTTATGGCC
 A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAWTTATCAA-
NTGATTTATGGCC
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAWTTATCAA
TGATTTATGGC
 A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAWTTATCAA
NGGGATTA----
 A C G T A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAWTTATCAA-
DGWTTTATGRCN
 A C G T A C T G C G T A C G A T A C G T A C G T G C T A A C G T G T A C C G T A C G T A A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C