Information for 4-CCRCAADTGGCAGGGD (Motif 5)

G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
Reverse Opposite:
G T C A A G T C G A T C T G A C C G A T C T A G G T A C G T A C G T C A G A C T C G A T A C G T A C T G A G C T C T A G C A T G
p-value:1e-12
log p-value:-2.949e+01
Information Content per bp:1.608
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.24%
Number of Background Sequences with motif333.5
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets41.7 +/- 25.7bp
Average Position of motif in Background50.2 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0078.1_Srf_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCRCAADTGGCAGGGD
TTCCATATATGGAA----
 A C G T A C G T G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCRCAADTGGCAGGGD
CCATATATGGNA----
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCRCAADTGGCAGGGD
CCATATATGG------
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCRCAADTGGCAGGGD
------TTGGCA----
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCRCAADTGGCAGGGD
-----NTTGGCANN--
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCRCAADTGGCAGGGD
-NACATATGGN-----
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CCRCAADTGGCAGGGD---
-------TGTCAGGGGGCG
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCRCAADTGGCAGGGD
----NNTTGGCANN--
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCRCAADTGGCAGGGD---
--NAGANTGGCGGGGNGNA
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T A C G T A C G T A C G T
A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

SOX21/MA0866.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCRCAADTGGCAGGGD-
--AACAATGGTAGTGTT
 G T A C A G T C T C G A G T A C G T C A G C T A C T G A A C G T A C T G A C T G G A T C C G T A A C T G C T A G T C A G C A G T A C G T
A C G T A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T