Information for 22-CTAKTTTACAATY (Motif 39)

A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
Reverse Opposite:
C T A G C T G A A C G T C A G T A T C G C G A T C T G A C G T A C G T A G T A C A G C T C G T A A C T G
p-value:1e-6
log p-value:-1.415e+01
Information Content per bp:1.731
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif73.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets42.3 +/- 22.9bp
Average Position of motif in Background47.7 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTAKTTTACAATY
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTAKTTTACAATY
TTCTATTTTTAGNNN
 A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTAKTTTACAATY
GAAAACTAGTTAACATC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTAKTTTACAATY
--ATTTTCCATT-
 A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTAKTTTACAATY-
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

PB0018.1_Foxk1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTAKTTTACAATY-
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTAKTTTACAATY
KCTATTTTTRGH--
 A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTAKTTTACAATY-
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C A C G T
T G C A A G T C A T G C G C A T C G A T C G A T C T A G A G C T C G A T A C G T C G T A G A T C C G T A G C A T C G A T G C A T G C T A

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAKTTTACAATY
ACTAGTTAAC----
 A C G T A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTAKTTTACAATY
-DGWTTTATGRCN
 A G T C A C G T C T G A A C T G A C G T A C G T G A C T G C T A A T G C G T C A T G C A A G C T A G T C
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C